PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41987.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family SRS
Protein Properties Length: 353aa    MW: 39008.3 Da    PI: 6.9078
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41987.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.31.2e-691162872154
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel................kskkqs 84 
                 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +ql+++++++a+s++++++kr re                      s
  KFK41987.1 116 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLSSLQHHSASSRETQNAKRLREAsggggggdnddnedhsGGGGGS 214
                 7899*************************************************************9888888888888899999888877655556778 PP

      DUF702  85 alsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                 al +t++++a+s++ le s+ lP+ev+s+avfrcvrvss++d  +e+e+aYqtav+igGhvfkGiLydqG+++
  KFK41987.1 215 ALGNTRVVNANSNSGLELSQhLPPEVNSPAVFRCVRVSSIEDdeDEQEYAYQTAVNIGGHVFKGILYDQGPDQ 287
                 999************998766*******************99434456***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.4E-64119286IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.4E-28121163IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016247.3E-27235285IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNKQDHHH QVDKDHHQHH QDKSNYLYLY KDEIYNNNKG FEIWPPQYFQ  60
QQEEQQQQHV SAPTNFYSFG MVPSGSSSNN NNNNRSRSLY FNVVSDHEPG GFTVTRQGGM  120
NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL SSLQHHSASS  180
RETQNAKRLR EASGGGGGGD NDDNEDHSGG GGGSALGNTR VVNANSNSGL ELSQHLPPEV  240
NSPAVFRCVR VSSIEDDEDE QEYAYQTAVN IGGHVFKGIL YDQGPDQDHH HHHLNLLAST  300
ATTTTNAGET ANKTAVTVAG NNNNGLILDP SSLYPAQLNS FIAGTPFFTP PRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889030.10.0hypothetical protein ARALYDRAFT_476700
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A087HIN50.0A0A087HIN5_ARAAL; Uncharacterized protein
STRINGfgenesh2_kg.2__1830__AT1G75520.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-151SHI-related sequence 5